OBO Foundry dashboard analysis¶

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/tmp/ipykernel_6487/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    34
Turtle            30
unknown           17
OWL/XML Syntax     2
Turtle Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 67 2595.333333 10871.761870 0.0 40.0 246.5 1629.50 96738.0
Declaration 67 594.428571 1392.102469 0.0 19.0 121.0 542.00 11135.0
SubClassOf 63 667.511905 2660.157421 0.0 1.5 47.5 442.75 23882.0
ObjectPropertyRange 56 29.595238 63.355018 0.0 0.0 13.5 30.00 520.0
ObjectPropertyDomain 55 28.202381 62.710423 0.0 0.0 9.5 28.75 517.0
DataPropertyRange 51 10.166667 23.022165 0.0 0.0 2.5 10.00 170.0
InverseObjectProperties 46 10.095238 21.756383 0.0 0.0 1.0 8.00 126.0
SubObjectPropertyOf 45 34.476190 90.488164 0.0 0.0 1.5 28.50 709.0
DataPropertyDomain 42 12.488095 35.559044 0.0 0.0 0.5 6.00 235.0
DisjointClasses 41 164.535714 1338.893334 0.0 0.0 0.0 10.50 12277.0
ClassAssertion 39 125.285714 460.751836 0.0 0.0 0.0 20.00 3053.0
EquivalentClasses 32 99.904762 671.680210 0.0 0.0 0.0 13.25 6147.0
SubAnnotationPropertyOf 31 5.261905 13.996660 0.0 0.0 0.0 4.00 85.0
SubDataPropertyOf 31 7.261905 27.874555 0.0 0.0 0.0 5.00 242.0
TransitiveObjectProperty 26 2.928571 7.116561 0.0 0.0 0.0 1.25 38.0
FunctionalObjectProperty 24 1.642857 3.595991 0.0 0.0 0.0 1.00 18.0
AnnotationPropertyRangeOf 20 1.250000 3.867925 0.0 0.0 0.0 0.00 20.0
FunctionalDataProperty 20 1.154762 3.854255 0.0 0.0 0.0 0.00 26.0
InverseFunctionalObjectProperty 18 0.726190 2.164061 0.0 0.0 0.0 0.00 12.0
ObjectPropertyAssertion 17 266.952381 1435.094203 0.0 0.0 0.0 0.00 10267.0
SymmetricObjectProperty 15 1.761905 5.772012 0.0 0.0 0.0 0.00 35.0
DataPropertyAssertion 14 91.392857 449.120131 0.0 0.0 0.0 0.00 3617.0
SubPropertyChainOf 14 2.869048 14.751581 0.0 0.0 0.0 0.00 120.0
IrrefexiveObjectProperty 13 1.130952 3.959980 0.0 0.0 0.0 0.00 22.0
AsymmetricObjectProperty 10 0.976190 3.481366 0.0 0.0 0.0 0.00 16.0
DisjointUnion 9 4.285714 17.976270 0.0 0.0 0.0 0.00 116.0
EquivalentObjectProperties 8 0.797619 4.129762 0.0 0.0 0.0 0.00 36.0
AnnotationPropertyDomain 8 0.214286 0.892694 0.0 0.0 0.0 0.00 6.0
DisjointObjectProperties 6 0.226190 1.010203 0.0 0.0 0.0 0.00 7.0
ReflexiveObjectProperty 6 0.107143 0.439547 0.0 0.0 0.0 0.00 3.0
DifferentIndividuals 5 0.380952 2.745883 0.0 0.0 0.0 0.00 25.0
Rule 5 0.559524 3.062998 0.0 0.0 0.0 0.00 25.0
SameIndividual 2 1.607143 12.985643 0.0 0.0 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.0 0.0 0.00 5.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.0 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 67 2599.178571 9332.541819 0.0 22.25 270.0 1694.00 78469.0
ObjectUnionOf 41 9.571429 18.905781 0.0 0.00 0.0 9.75 88.0
ObjectAllValuesFrom 36 19.047619 51.646599 0.0 0.00 0.0 15.25 400.0
ObjectSomeValuesFrom 35 262.238095 1815.596152 0.0 0.00 0.0 28.50 16614.0
ObjectIntersectionOf 31 95.869048 679.567523 0.0 0.00 0.0 10.75 6217.0
ObjectExactCardinality 27 4.416667 15.182590 0.0 0.00 0.0 1.25 115.0
DataExactCardinality 22 1.904762 4.126374 0.0 0.00 0.0 1.00 18.0
DataSomeValuesFrom 14 1.488095 4.885420 0.0 0.00 0.0 0.00 33.0
ObjectComplementOf 13 3.285714 19.900700 0.0 0.00 0.0 0.00 179.0
ObjectMinCardinality 13 1.083333 3.433388 0.0 0.00 0.0 0.00 19.0
DataAllValuesFrom 12 0.464286 1.484429 0.0 0.00 0.0 0.00 9.0
DataHasValue 12 16.630952 62.522435 0.0 0.00 0.0 0.00 494.0
ObjectMaxCardinality 11 10.892857 97.519478 0.0 0.00 0.0 0.00 894.0
ObjectOneOf 9 5.595238 34.894029 0.0 0.00 0.0 0.00 272.0
ObjectHasValue 9 6.940476 33.612373 0.0 0.00 0.0 0.00 211.0
DataMinCardinality 5 0.059524 0.238024 0.0 0.00 0.0 0.00 1.0
DataMaxCardinality 5 0.488095 2.417277 0.0 0.00 0.0 0.00 17.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
42 OBO 0.322 0.549 0.095
57 PROVO 0.305 0.504 0.107
25 FOAF 0.291 0.333 0.250
27 IAO 0.289 0.578 0.000
54 PMDCO 0.275 0.549 0.000
77 nfdicore 0.275 0.549 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
15 EMMO 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
20 EMMO_crystallography 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
19 EMMO_atomistic 0.252 0.504 0.000
21 EMMO_mappings 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
61 SAREF 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
30 MAMBO 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
64 SO 0.234 0.467 0.000
65 SP 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
12 DEB 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
13 DISO 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
41 OA 0.222 0.444 0.000
38 MaterialsMine 0.222 0.444 0.000
49 OM 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
40 NanoMine 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
9 CIF-core 0.222 0.444 0.000
82 tribAIn 0.219 0.438 0.000
29 LPBFO 0.219 0.438 0.000
34 MOL_TENSILE 0.219 0.438 0.000
28 LDO 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
68 WILD 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
1 ASMO 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
7 CHEMINF 0.200 0.400 0.000
5 CDCO 0.200 0.400 0.000
66 SSN 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
63 SKOS_MDO 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
56 PRIMA 0.189 0.378 0.000
73 matinfo 0.167 0.333 0.000
11 CSO 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
78 ontorule 0.155 0.311 0.000
81 ssos 0.155 0.311 0.000
33 MOL_BRINELL 0.155 0.311 0.000
32 MDS 0.155 0.311 0.000
69 bmo 0.155 0.311 0.000
43 OEO 0.000 0.000 0.000
70 enanomapper 0.000 0.000 0.000
52 PATO 0.000 0.000 0.095
8 CHMO 0.000 0.000 0.048
83 vimmp 0.000 0.000 0.000
59 QUDT 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000
16 EMMO_BVC 0.000 0.000 0.000
22 EMMO_mechanical_testing 0.000 0.000 0.000
23 EMMO_microstructure 0.000 0.000 0.000
47 OIEmodels 0.000 0.000 0.000
74 metal-alloy 0.000 0.000 0.000
26 GPO 0.000 0.000 0.000
6 CHAMEO 0.000 0.000 0.000
44 OIEcharacterisation-methods 0.000 0.000 0.000
79 opmw 0.000 0.000 0.000
45 OIEmanufacturing 0.000 0.000 0.000
46 OIEmaterials 0.000 0.000 0.000
58 Photovoltaics 0.000 0.000 0.000
48 OIEsoftware 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.167583 0.099514 0.0 0.155 0.2 0.234 0.322
score_dash 84.0 0.329714 0.194023 0.0 0.311 0.4 0.467 0.578
score_impact 84.0 0.007083 0.032945 0.0 0.000 0.0 0.000 0.250

OBO dependency graph